hu.MAP 3.0: Complex View
Human Protein Complex Map
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Complex: huMAP3_02465.1
Confidence: Extremely High  
ProteinsGenename | Protein Name | Uniprot Annotation Score | Links |
---|---|---|---|
COIL | Coilin (p80-coilin) | 5 | UniProt   NCBI |
PATL1 | Protein PAT1 homolog 1 (PAT1-like protein 1) (Protein PAT1 homolog b) (Pat1b) (hPat1b) | 5 | UniProt   NCBI |
PRMT5 | Protein arginine N-methyltransferase 5 (PRMT5) (EC 2.1.1.320) (72 kDa ICln-binding protein) (Histone-arginine N-methyltransferase PRMT5) (Jak-binding protein 1) (Shk1 kinase-binding protein 1 homolog) (SKB1 homolog) (SKB1Hs) [Cleaved into: Protein arginine N-methyltransferase 5, N-terminally processed] | 5 | UniProt   NCBI |
LSM7 | U6 snRNA-associated Sm-like protein LSm7 | 5 | UniProt   NCBI |
WBP4 | WW domain-binding protein 4 (WBP-4) (Formin-binding protein 21) (WW domain-containing-binding protein 4) | 5 | UniProt   NCBI |
LSM1 | U6 snRNA-associated Sm-like protein LSm1 (Cancer-associated Sm-like) (Small nuclear ribonuclear CaSm) | 5 | UniProt   NCBI |
TMCO6 | Transmembrane and coiled-coil domain-containing protein 6 | 3 | UniProt   NCBI |
RIOK1 | Serine/threonine-protein kinase RIO1 (EC 2.7.11.1) (EC 3.6.3.-) (RIO kinase 1) | 5 | UniProt   NCBI |
WDR77 | Methylosome protein WDR77 (Androgen receptor cofactor p44) (Methylosome protein 50) (MEP-50) (WD repeat-containing protein 77) (p44/Mep50) | 5 | UniProt   NCBI |
LSM2 | U6 snRNA-associated Sm-like protein LSm2 (Protein G7b) (Small nuclear ribonuclear protein D homolog) (snRNP core Sm-like protein Sm-x5) | 5 | UniProt   NCBI |
LSM6 | U6 snRNA-associated Sm-like protein LSm6 | 5 | UniProt   NCBI |
LSM5 | U6 snRNA-associated Sm-like protein LSm5 | 5 | UniProt   NCBI |
ZNF511 | Zinc finger protein 511 | 5 | UniProt   NCBI |
RBM42 | RNA-binding protein 42 (RNA-binding motif protein 42) | 5 | UniProt   NCBI |
LSM4 | U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich protein) (GRP) | 5 | UniProt   NCBI |
Enrichments
Term ID | Corrected Pval | Fraction Complex Coverage | Proteins | Term Name |
---|---|---|---|---|
  CORUM:561 | 1.25716094515e-16 | 0.4 | LSM5 LSM4 LSM7 LSM1 LSM2 LSM6 | LSm1-7 complex |
  REAC:R-HSA-430039 | 4.37671201829e-16 | 0.466666666667 | LSM5 LSM1 PATL1 LSM7 LSM4 LSM2 LSM6 | mRNA decay by 5' to 3' exoribonuclease |
  CORUM:562 | 5.50676012339e-13 | 0.333333333333 | LSM2 LSM5 LSM4 LSM7 LSM6 | LSm2-8 complex |
  GO:0000375 | 4.46522943716e-12 | 0.733333333333 | LSM4 WBP4 LSM1 WDR77 RBM42 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | RNA splicing, via transesterification reactions |
  REAC:R-HSA-8953854 | 1.20400804925e-11 | 0.8 | RIOK1 WBP4 LSM4 LSM1 WDR77 PATL1 LSM5 LSM7 LSM2 PRMT5 RBM42 LSM6 | Metabolism of RNA |
  REAC:R-HSA-429914 | 1.35394875935e-11 | 0.466666666667 | LSM5 LSM1 PATL1 LSM7 LSM4 LSM2 LSM6 | Deadenylation-dependent mRNA decay |
  KEGG:03018 | 2.05226561806e-11 | 0.466666666667 | LSM5 LSM1 PATL1 LSM7 LSM4 LSM2 LSM6 | RNA degradation |
  GO:0006397 | 4.90564186363e-11 | 0.733333333333 | LSM4 WBP4 LSM1 WDR77 RBM42 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | mRNA processing |
  GO:0008380 | 1.3067883003e-10 | 0.733333333333 | LSM4 WBP4 LSM1 WDR77 RBM42 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | RNA splicing |
  GO:0016071 | 1.60679458684e-10 | 0.8 | LSM4 WBP4 LSM1 WDR77 RBM42 PATL1 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | mRNA metabolic process |
  GO:0000398 | 4.6714758631e-10 | 0.666666666667 | WBP4 LSM4 WDR77 RBM42 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | mRNA splicing, via spliceosome |
  GO:0000377 | 4.6714758631e-10 | 0.666666666667 | WBP4 LSM4 WDR77 RBM42 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile |
  GO:0120115 | 5.67196292709e-10 | 0.333333333333 | LSM2 LSM5 LSM4 LSM7 LSM6 | Lsm2-8 complex |
  GO:0005688 | 1.51166065257e-09 | 0.333333333333 | LSM2 LSM5 LSM4 LSM7 LSM6 | U6 snRNP |
  GO:0006396 | 7.90033791359e-09 | 0.8 | RIOK1 WBP4 LSM4 LSM1 WDR77 RBM42 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | RNA processing |
  GO:0046540 | 2.45258225799e-08 | 0.4 | LSM5 LSM4 LSM7 LSM2 RBM42 LSM6 | U4/U6 x U5 tri-snRNP complex |
  GO:0097526 | 2.45258225799e-08 | 0.4 | LSM5 LSM4 LSM7 LSM2 RBM42 LSM6 | spliceosomal tri-snRNP complex |
  GO:0120114 | 5.4209252127e-08 | 0.466666666667 | LSM5 LSM1 LSM7 LSM4 LSM2 RBM42 LSM6 | Sm-like protein family complex |
  REAC:R-HSA-72163 | 1.47144553849e-07 | 0.466666666667 | LSM5 LSM4 WBP4 LSM7 LSM2 RBM42 LSM6 | mRNA Splicing - Major Pathway |
  GO:1990726 | 1.79475545894e-07 | 0.266666666667 | LSM1 LSM5 LSM7 LSM2 | Lsm1-7-Pat1 complex |
  REAC:R-HSA-72172 | 1.87026340607e-07 | 0.466666666667 | LSM5 LSM4 WBP4 LSM7 LSM2 RBM42 LSM6 | mRNA Splicing |
  GO:0071005 | 2.87341735405e-07 | 0.4 | LSM5 LSM4 WBP4 LSM7 LSM2 LSM6 | U2-type precatalytic spliceosome |
  GO:0071011 | 3.67741044603e-07 | 0.4 | LSM5 LSM4 WBP4 LSM7 LSM2 LSM6 | precatalytic spliceosome |
  REAC:R-HSA-72203 | 1.27809076721e-06 | 0.466666666667 | LSM5 LSM4 WBP4 LSM7 LSM2 RBM42 LSM6 | Processing of Capped Intron-Containing Pre-mRNA |
  GO:0097525 | 1.34570261314e-06 | 0.4 | LSM5 LSM4 LSM7 LSM2 RBM42 LSM6 | spliceosomal snRNP complex |
  GO:0030532 | 3.04090432346e-06 | 0.4 | LSM5 LSM4 LSM7 LSM2 RBM42 LSM6 | small nuclear ribonucleoprotein complex |
  KEGG:03040 | 6.75151993135e-06 | 0.333333333333 | LSM2 LSM5 LSM4 LSM7 LSM6 | Spliceosome |
  GO:0005684 | 1.02929050402e-05 | 0.4 | LSM5 LSM4 WBP4 LSM7 LSM2 LSM6 | U2-type spliceosomal complex |
  GO:0000387 | 1.52692703458e-05 | 0.333333333333 | PRMT5 LSM4 LSM2 COIL WDR77 | spliceosomal snRNP assembly |
  CORUM:837 | 0.000143102677271 | 0.133333333333 | PRMT5 WDR77 | MEP50-PRMT5-ICLN complex |
  CORUM:2838 | 0.000143102677271 | 0.133333333333 | PRMT5 WDR77 | MEP50-PRMT5-ICLN complex |
  GO:0000932 | 0.000448399105837 | 0.333333333333 | PATL1 LSM4 LSM2 LSM6 LSM1 | P-body |
  CORUM:351 | 0.000451933310477 | 0.266666666667 | LSM2 LSM4 LSM7 LSM6 | Spliceosome |
  CORUM:6858 | 0.000476443303259 | 0.133333333333 | PRMT5 WDR77 | CHTOP-methylosome complex |
  GO:0005681 | 0.000520247571739 | 0.4 | LSM5 LSM4 WBP4 LSM7 LSM2 LSM6 | spliceosomal complex |
  CORUM:810 | 0.000999344595595 | 0.133333333333 | PRMT5 WDR77 | FCP1-associated protein complex |
  CORUM:811 | 0.000999344595595 | 0.133333333333 | PRMT5 WDR77 | FCP1-associated protein complex |
  GO:1990904 | 0.00172995805611 | 0.533333333333 | RIOK1 LSM5 LSM4 WBP4 LSM7 LSM2 RBM42 LSM6 | ribonucleoprotein complex |
  GO:0022613 | 0.00253039690998 | 0.466666666667 | RIOK1 LSM6 LSM4 WDR77 PRMT5 LSM2 COIL | ribonucleoprotein complex biogenesis |
  GO:0017069 | 0.00475956790881 | 0.266666666667 | LSM2 LSM4 COIL LSM7 | snRNA binding |
  GO:0003723 | 0.0060389379995 | 0.666666666667 | WBP4 LSM1 RBM42 PATL1 LSM5 LSM7 LSM4 LSM2 COIL LSM6 | RNA binding |
  GO:0016070 | 0.0099762017936 | 0.866666666667 | RIOK1 WBP4 LSM4 LSM1 WDR77 RBM42 PATL1 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | RNA metabolic process |
  GO:0017070 | 0.0158118674804 | 0.2 | LSM2 LSM7 LSM4 | U6 snRNA binding |
  GO:0003676 | 0.0259179260221 | 0.8 | LSM4 WBP4 LSM1 WDR77 RBM42 PATL1 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | nucleic acid binding |
  GO:0022618 | 0.0428383847677 | 0.333333333333 | PRMT5 LSM4 LSM2 COIL WDR77 | protein-RNA complex assembly |
  GO:0090304 | 0.0459903481626 | 0.866666666667 | RIOK1 WBP4 LSM4 LSM1 WDR77 RBM42 PATL1 LSM5 LSM7 LSM2 PRMT5 COIL LSM6 | nucleic acid metabolic process |
  CORUM:1748 | 0.0498224659463 | 0.0666666666667 | PRMT5 | PRMT5 complex |
  CORUM:2764 | 0.0498224659463 | 0.0666666666667 | PRMT5 | PRMT5 complex |
Edges
Protein 1 | Protein 2 | Score | ProteomeHD |
---|---|---|---|
 LSM2 |  LSM6 | 1.0 | 0.982           |
 LSM1 |  LSM6 | 1.0 | 0.334           |
 LSM6 |  LSM4 | 1.0 | 0.988           |
 LSM7 |  LSM6 | 1.0 | 0.95           |
 LSM1 |  LSM2 | 1.0 | 0.282           |
 LSM5 |  LSM4 | 1.0 | 0.922           |
 LSM7 |  LSM2 | 1.0 | 0.966           |
 LSM2 |  LSM4 | 1.0 | 0.964           |
 LSM6 |  LSM5 | 1.0 | 0.868           |
 LSM1 |  LSM5 | 1.0 | 0.462           |
 LSM7 |  LSM5 | 1.0 | 0.896           |
 RIOK1 |  LSM6 | 1.0 | 0.044           |
 PATL1 |  LSM1 | 1.0 | 0.172           |
 LSM7 |  LSM4 | 1.0 | 0.968           |
 LSM7 |  LSM1 | 1.0 | 0.486           |
 PRMT5 |  LSM6 | 1.0 | 0.1           |
 LSM1 |  LSM4 | 0.999 | 0.254           |
 PATL1 |  LSM6 | 0.999 | 0.108           |
 WDR77 |  LSM6 | 0.999 | 0.082           |
 PRMT5 |  WDR77 | 0.999 | 0.914           |
 TMCO6 |  ZNF511 | 0.999 | 0.208           |
 PATL1 |  LSM4 | 0.999 | 0.098           |
 LSM2 |  LSM5 | 0.999 | 0.864           |
 LSM6 |  ZNF511 | 0.999 | 0.166           |
 PATL1 |  LSM7 | 0.999 | 0.12           |
 PATL1 |  LSM5 | 0.998 | 0.124           |
 PRMT5 |  LSM4 | 0.998 | 0.074           |
 LSM5 |  ZNF511 | 0.998 | 0.17           |
 COIL |  LSM6 | 0.997 | 0.06           |
 LSM7 |  ZNF511 | 0.997 | 0.168           |
 WDR77 |  LSM4 | 0.996 | 0.126           |
 TMCO6 |  LSM5 | 0.996 | 0.104           |
 COIL |  LSM4 | 0.996 | 0.126           |
 LSM7 |  TMCO6 | 0.995 | 0.138           |
 PATL1 |  LSM2 | 0.995 | 0.156           |
 COIL |  LSM7 | 0.995 | 0.074           |
 RIOK1 |  LSM4 | 0.995 | 0.204           |
 PRMT5 |  RIOK1 | 0.994 | 0.214           |
 RIOK1 |  WDR77 | 0.994 | 0.196           |
 RBM42 |  LSM2 | 0.993 | 0.432           |
 WBP4 |  LSM6 | 0.993 | 0.412           |
 ZNF511 |  LSM4 | 0.989 | 0.196           |
 COIL |  WBP4 | 0.989 | 0.096           |
 RBM42 |  LSM5 | 0.985 | 0.288           |
 RBM42 |  LSM6 | 0.983 | 0.144           |
 COIL |  LSM2 | 0.982 | 0.202           |
 TMCO6 |  LSM4 | 0.982 | 0.092           |
 WBP4 |  LSM4 | 0.981 | 0.448           |
 RBM42 |  LSM7 | 0.98 | 0.29           |
 COIL |  LSM5 | 0.98 | 0.012           |
 TMCO6 |  LSM6 | 0.975 | 0.072           |
 RIOK1 |  COIL | 0.972 | 0.152           |
 WDR77 |  LSM1 | 0.946 | 0.094           |
 PRMT5 |  COIL | 0.939 | 0.344           |
 PRMT5 |  LSM7 | 0.935 | 0.102           |
 WDR77 |  COIL | 0.926 | 0.154           |
 PRMT5 |  LSM2 | 0.919 | 0.08           |
 PATL1 |  TMCO6 | 0.898 | 0.076           |
 WBP4 |  LSM2 | 0.893 | 0.562           |
 PATL1 |  ZNF511 | 0.871 | 0.166           |
 WDR77 |  LSM2 | 0.87 | 0.254           |
 RBM42 |  LSM4 | 0.862 | 0.328           |
 LSM1 |  ZNF511 | 0.861 | 0.084           |
 TMCO6 |  LSM2 | 0.851 | 0.152           |
 LSM2 |  ZNF511 | 0.841 | 0.258           |
 LSM1 |  TMCO6 | 0.831 | 0.046           |
 COIL |  ZNF511 | 0.819 | 0.078           |
 WDR77 |  LSM7 | 0.816 | 0.2           |
 RBM42 |  WBP4 | 0.813 | 0.242           |
 LSM7 |  WBP4 | 0.789 | 0.404           |
 RIOK1 |  LSM5 | 0.787 | 0.034           |
 WBP4 |  LSM5 | 0.785 | 0.328           |
 WDR77 |  LSM5 | 0.782 | 0.076           |
 COIL |  TMCO6 | 0.761 | 0.078           |
 PRMT5 |  LSM1 | 0.648 | 0.142           |
 RBM42 |  LSM1 | 0.64 | 0.05           |
 COIL |  LSM1 | 0.616 | 0.046           |
 RIOK1 |  LSM7 | 0.616 | 0.048           |
 RIOK1 |  LSM2 | 0.559 | 0.07           |
 RIOK1 |  PATL1 | 0.547 | 0.249138888889           |
 RIOK1 |  ZNF511 | 0.539 | 0.072           |
 RBM42 |  ZNF511 | 0.466 | 0.118           |
 WDR77 |  ZNF511 | 0.395 | 0.094           |
 WDR77 |  TMCO6 | 0.391 | 0.094           |
 PRMT5 |  LSM5 | 0.386 | 0.106           |
 WDR77 |  PATL1 | 0.377 | 0.108           |
 RBM42 |  COIL | 0.361 | 0.096           |
 PRMT5 |  ZNF511 | 0.352 | 0.11           |
 RIOK1 |  TMCO6 | 0.348 | 0.056           |
 RBM42 |  TMCO6 | 0.334 | 0.068           |
 RBM42 |  PATL1 | 0.216 | 0.056           |
 WBP4 |  LSM1 | 0.21 | 0.136           |
 RIOK1 |  LSM1 | 0.197 | 0.048           |
 COIL |  PATL1 | 0.174 | 0.156           |
 PRMT5 |  PATL1 | 0.169 | 0.17           |
 RIOK1 |  WBP4 | 0.161 | 0.122           |
 RBM42 |  WDR77 | 0.149 | 0.124           |
 PRMT5 |  WBP4 | 0.128 | 0.118           |
 WBP4 |  ZNF511 | 0.102 | 0.074           |
 WBP4 |  TMCO6 | 0.092 | 0.092           |
 RBM42 |  RIOK1 | 0.068 | 0.038           |
 PRMT5 |  TMCO6 | 0.059 | 0.166           |
 WDR77 |  WBP4 | 0.056 | 0.218           |
 RBM42 |  PRMT5 | 0.035 | 0.24           |
 PATL1 |  WBP4 | 0.031 | 0.216           |
Related Complexes